构建系统发育树需要注意的几个问题

R Upper-triangular data metrix? No S Subreplication? No

J Randomize input order of species? Yes M Analyze multiple data sets? Yes, 1000 sets 0 Terminal type ? IBM PC 1 Print out the data at start of run No 2 Print indications of progress of run Yes 3 Print out tree Yes

4 Write out trees onto tree file? Yes

Y to accept these of type the letter for one to change Y

生成文件C:\\Program Files\\Phylip\\exe\\ outtree&outfile。 重命名outtree→intree；outfile→infile。 2.4.5打开consense.exe

Consensus tree program, version 3.6a3 Settings for this run:

C Consensus type ? Majority rule (extended) O Outgroop root? No, use as outgroup species 1 R Trees to be treated as Rooted? No

T Terminal type ? 1 Print out the sets of the species Yes 2 Print indications of progress of run Yes 3 Print out tree Yes

4 Write out trees onto tree file? Yes

Are these settings correct? R T

Settings for this run:

C Consensus type ? Majority rule (extended) R Trees to be treated as Rooted? Yes

T Terminal type ? IBM PC 1 Print out the sets of the species Yes 2 Print indications of progress of run Yes 3 Print out tree Yes

4 Write out trees onto tree file? Yes Y

生成文件C:\\Program Files\\Phylip\\exe\\ outtree。 重命名outtree→ jc.tre。 2.4.6打开TreeView

打开C:\\Program Files\\Phylip\\exe\\ jc.tre。以下操作参照前述详细说明即可。